PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_000420
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family C3H
Protein Properties Length: 569aa    MW: 62742 Da    PI: 7.8612
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_000420genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.35.3e-08134156326
                  S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                  t++C+ffa  G C+ G +C+F+H+
  DCAR_000420 134 TVPCKFFAS-GNCRNGKSCRFSHD 156
                  89***5555.*************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.1E-6131157IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.84131158IPR000571Zinc finger, CCCH-type
PfamPF006426.3E-6134156IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.06E-6134156IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.3E-5134157IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 569 aa     Download sequence    Send to blast
MSGSGHRRPS KWDLEEVSRD YHHSRDPIGP GSERPSNRES QPRWHSREGN YKVARDSLDD  60
TVLWDGESTM SPGLDDWRQQ KRKYSYESSR GISRRSRSRS KSPGHRSERP GVNDRFGRIA  120
SFDHRNHEPC RISTVPCKFF ASGNCRNGKS CRFSHDDQTR DSFSNYKSND YRQGVDSRAN  180
MSPLREGSKW SGSASHFNLP KHCGNKNESL GEQRVMRSSV GGSAPGDNRL MAHEMDIDEA  240
TTNNQSNDLG LTKPSSSVMG ASKSRGTALH GVDIEGSTTH TEGHLPDLIG TSRKPDVLDT  300
VKSEATSSNQ CVMSTEKFSD LTRSLAQLLG DGKQLPELYA ALNASNALGF MQSSVADPDV  360
FPASSSSQYD PVNDSMELIK SVISEQPDGI ALQSNLPFTG KPSVDGLNGT HCKDVELNDN  420
SHQSSEKHEF GDCENEEQGV VKAEDKKEGQ EGSKLSDNER DDKADGGDKA DEKKKNSDGK  480
NLRAFKFSLA EFVKELLKPT WKAGKLNKES HKTIVKKVVD KVTSSVQGSQ IPQTQEKIDS  540
YLSASKPKLS KLIQAYVDKV QKENPKVA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52552029
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.12e-10C3H family protein